napari_cellseg3d.code_models

This folder contains the code used by models in the plugin.

• models folder: contains the model classes, which are wrappers for the actual models. The wrappers are used to ensure that the models are compatible with the plugin.

• model_framework.py: contains the code for the model framework, used by training and inference plugins

• worker_inference.py: contains the code for the inference worker

• worker_training.py: contains the code for the training worker

• instance_segmentation.py: contains the code for instance segmentation

• crf.py: contains the code for the CRF postprocessing

• worker_utils.py: contains functions used by the workers

Modules

napari_cellseg3d.code_models.crf	Implements the CRF post-processing step for the W-Net.
napari_cellseg3d.code_models.instance_segmentation	Instance segmentation methods for 3D images.
napari_cellseg3d.code_models.model_framework	Basic napari plugin framework for inference and training.
napari_cellseg3d.code_models.models	Contains model code and wrappers for the models, as classes.
napari_cellseg3d.code_models.worker_inference	Contains the InferenceWorker class, which is a custom worker to run inference jobs in.
napari_cellseg3d.code_models.worker_training	Contains the workers used to train the models.
napari_cellseg3d.code_models.workers_utils	Several worker-related utilities for inference and training.